Index

_

__init__() (pyDeltaRCM.model.DeltaModel method) (pyDeltaRCM.preprocessor.BasePreprocessor method) (pyDeltaRCM.preprocessor.Preprocessor method) (pyDeltaRCM.preprocessor.PreprocessorCLI method) (pyDeltaRCM.sed_tools.BaseRouter method) (pyDeltaRCM.sed_tools.MudRouter method) (pyDeltaRCM.sed_tools.SandRouter method) _accumulate_free_surface_walks() (in module pyDeltaRCM.water_tools) _calculate_new_inds() (in module pyDeltaRCM.water_tools) _check_deprecated_hooks() (pyDeltaRCM.hook_tools.hook_tools method) _check_for_loops() (in module pyDeltaRCM.water_tools) _choose_next_directions() (in module pyDeltaRCM.water_tools) _compute_Vp_ero() (pyDeltaRCM.sed_tools.BaseRouter method) _deposit_or_erode() (pyDeltaRCM.sed_tools.BaseRouter method) _docs_temp_directory() (in module pyDeltaRCM.shared_tools)

_expand_ensemble() (pyDeltaRCM.preprocessor.BasePreprocessor method) _expand_matrix() (pyDeltaRCM.preprocessor.BasePreprocessor method) _get_version() (in module pyDeltaRCM.shared_tools) _get_weight_at_cell_sediment() (in module pyDeltaRCM.sed_tools) _get_weight_at_cell_water() (in module pyDeltaRCM.water_tools) _limit_Vp_change() (pyDeltaRCM.sed_tools.BaseRouter method) _load_past_etas() (pyDeltaRCM.init_tools.init_tools method) _open_yaml() (pyDeltaRCM.preprocessor.BasePreprocessor method) _prelim_config_parsing() (pyDeltaRCM.preprocessor.BasePreprocessor method) _scale_factor() (in module pyDeltaRCM.shared_tools) _smooth_free_surface() (in module pyDeltaRCM.water_tools) _update_absQfield() (in module pyDeltaRCM.water_tools) _update_dirQfield() (in module pyDeltaRCM.water_tools) _update_fields() (pyDeltaRCM.sed_tools.BaseRouter method) _write_yaml_config_to_file() (in module pyDeltaRCM.preprocessor)

A

active_layer_thickness (pyDeltaRCM.model.DeltaModel property)

alpha (pyDeltaRCM.model.DeltaModel property) apply_subsidence() (pyDeltaRCM.iteration_tools.iteration_tools method)

B

BasePreprocessor (class in pyDeltaRCM.preprocessor) BaseRouter (class in pyDeltaRCM.sed_tools) bed_elevation (pyDeltaRCM.model.DeltaModel property)

bedload_fraction (pyDeltaRCM.model.DeltaModel property) beta (pyDeltaRCM.model.DeltaModel property) build_weight_array() (pyDeltaRCM.water_tools.water_tools method)

C

C0_percent (pyDeltaRCM.model.DeltaModel property) channel_flow_depth (pyDeltaRCM.model.DeltaModel property) channel_flow_velocity (pyDeltaRCM.model.DeltaModel property) channel_width (pyDeltaRCM.model.DeltaModel property) check_for_boundary() (pyDeltaRCM.water_tools.water_tools method) check_size_of_indices_matrix() (pyDeltaRCM.water_tools.water_tools method) checkpoint_dt (pyDeltaRCM.model.DeltaModel property) clobber_netcdf (pyDeltaRCM.model.DeltaModel property) coeff_theta_mud (pyDeltaRCM.model.DeltaModel property) coeff_theta_sand (pyDeltaRCM.model.DeltaModel property) coeff_U_dep_mud (pyDeltaRCM.model.DeltaModel property) coeff_U_ero_mud (pyDeltaRCM.model.DeltaModel property)

coeff_U_ero_sand (pyDeltaRCM.model.DeltaModel property) compute_free_surface() (pyDeltaRCM.water_tools.water_tools method) compute_sand_frac() (pyDeltaRCM.iteration_tools.iteration_tools method) config_list (pyDeltaRCM.preprocessor.BasePreprocessor property) construct_file_list() (pyDeltaRCM.preprocessor.BasePreprocessor method) create_boundary_conditions() (pyDeltaRCM.init_tools.init_tools method) create_domain() (pyDeltaRCM.init_tools.init_tools method) create_other_variables() (pyDeltaRCM.init_tools.init_tools method) Csmooth (pyDeltaRCM.model.DeltaModel property) custom_pad() (in module pyDeltaRCM.shared_tools) custom_ravel() (in module pyDeltaRCM.shared_tools) custom_unravel() (in module pyDeltaRCM.shared_tools) custom_yaml_loader() (in module pyDeltaRCM.shared_tools)

D

debug_tools (class in pyDeltaRCM.debug_tools) DeltaModel (class in pyDeltaRCM.model)

determine_random_seed() (pyDeltaRCM.init_tools.init_tools method) dt (pyDeltaRCM.model.DeltaModel property) dx (pyDeltaRCM.model.DeltaModel property)

F

f_bedload (pyDeltaRCM.model.DeltaModel property) file_list (pyDeltaRCM.preprocessor.BasePreprocessor property) finalize() (pyDeltaRCM.model.DeltaModel method)

finalize_free_surface() (pyDeltaRCM.water_tools.water_tools method) finalize_timestep() (pyDeltaRCM.iteration_tools.iteration_tools method) finalize_water_iteration() (pyDeltaRCM.water_tools.water_tools method) flooding_correction() (pyDeltaRCM.water_tools.water_tools method)

G

get_inlet_weights() (in module pyDeltaRCM.shared_tools) get_inlet_weights_sediment() (pyDeltaRCM.sed_tools.sed_tools method) get_inlet_weights_water() (pyDeltaRCM.water_tools.water_tools method) get_random_state() (in module pyDeltaRCM.shared_tools) get_random_uniform() (in module pyDeltaRCM.shared_tools)

get_start_indices() (in module pyDeltaRCM.shared_tools) get_steps() (in module pyDeltaRCM.shared_tools) get_water_weight_array() (pyDeltaRCM.water_tools.water_tools method) get_weight_sfc_int() (in module pyDeltaRCM.shared_tools) get_wet_mask_nh() (pyDeltaRCM.water_tools.water_tools method)

H

h0 (pyDeltaRCM.model.DeltaModel property) H_SL (pyDeltaRCM.model.DeltaModel property) hb (pyDeltaRCM.model.DeltaModel property) hook_after_create_domain() (pyDeltaRCM.hook_tools.hook_tools method) hook_after_finalize_timestep() (pyDeltaRCM.hook_tools.hook_tools method) hook_after_route_sediment() (pyDeltaRCM.hook_tools.hook_tools method) hook_after_route_water() (pyDeltaRCM.hook_tools.hook_tools method) hook_apply_subsidence() (pyDeltaRCM.hook_tools.hook_tools method) hook_compute_free_surface() (pyDeltaRCM.hook_tools.hook_tools method) hook_compute_sand_frac() (pyDeltaRCM.hook_tools.hook_tools method) hook_create_domain() (pyDeltaRCM.hook_tools.hook_tools method) hook_create_other_variables() (pyDeltaRCM.hook_tools.hook_tools method) hook_finalize_timestep() (pyDeltaRCM.hook_tools.hook_tools method) hook_finalize_water_iteration() (pyDeltaRCM.hook_tools.hook_tools method) hook_import_files() (pyDeltaRCM.hook_tools.hook_tools method)

hook_init_output_file() (pyDeltaRCM.hook_tools.hook_tools method) hook_init_sediment_iteration() (pyDeltaRCM.hook_tools.hook_tools method) hook_init_water_iteration() (pyDeltaRCM.hook_tools.hook_tools method) hook_load_checkpoint() (pyDeltaRCM.hook_tools.hook_tools method) hook_output_checkpoint() (pyDeltaRCM.hook_tools.hook_tools method) hook_output_data() (pyDeltaRCM.hook_tools.hook_tools method) hook_process_input_to_model() (pyDeltaRCM.hook_tools.hook_tools method) hook_route_all_mud_parcels() (pyDeltaRCM.hook_tools.hook_tools method) hook_route_all_sand_parcels() (pyDeltaRCM.hook_tools.hook_tools method) hook_route_sediment() (pyDeltaRCM.hook_tools.hook_tools method) hook_route_water() (pyDeltaRCM.hook_tools.hook_tools method) hook_run_water_iteration() (pyDeltaRCM.hook_tools.hook_tools method) hook_solve_water_and_sediment_timestep() (pyDeltaRCM.hook_tools.hook_tools method) hook_tools (class in pyDeltaRCM.hook_tools) hook_topo_diffusion() (pyDeltaRCM.hook_tools.hook_tools method)

I

If (pyDeltaRCM.model.DeltaModel property) import_files() (pyDeltaRCM.init_tools.init_tools method) influx_sediment_concentration (pyDeltaRCM.model.DeltaModel property) init_logger() (pyDeltaRCM.init_tools.init_tools method) init_metadata_list() (pyDeltaRCM.init_tools.init_tools method) init_output_file() (pyDeltaRCM.init_tools.init_tools method) init_output_infrastructure() (pyDeltaRCM.init_tools.init_tools method)

init_sediment_iteration() (pyDeltaRCM.sed_tools.sed_tools method) init_sediment_routers() (pyDeltaRCM.init_tools.init_tools method) init_subsidence() (pyDeltaRCM.init_tools.init_tools method) init_tools (class in pyDeltaRCM.init_tools) init_water_iteration() (pyDeltaRCM.water_tools.water_tools method) iteration_tools (class in pyDeltaRCM.iteration_tools) itermax (pyDeltaRCM.model.DeltaModel property)

J

job_list (pyDeltaRCM.preprocessor.BasePreprocessor property)

L

L0_meters (pyDeltaRCM.model.DeltaModel property) legacy_netcdf (pyDeltaRCM.model.DeltaModel property) Length (pyDeltaRCM.model.DeltaModel property)

load_checkpoint() (pyDeltaRCM.init_tools.init_tools method) log_info() (pyDeltaRCM.iteration_tools.iteration_tools method) log_model_time() (pyDeltaRCM.iteration_tools.iteration_tools method)

M

make_figure() (pyDeltaRCM.iteration_tools.iteration_tools method)

MudRouter (class in pyDeltaRCM.sed_tools)

N

N0_meters (pyDeltaRCM.model.DeltaModel property) Np_sed (pyDeltaRCM.model.DeltaModel property)

Np_water (pyDeltaRCM.model.DeltaModel property) Nsmooth (pyDeltaRCM.model.DeltaModel property)

O

omega_flow (pyDeltaRCM.model.DeltaModel property) omega_sfc (pyDeltaRCM.model.DeltaModel property) open_input_file_to_dict() (pyDeltaRCM.preprocessor.BasePreprocessor method)

out_dir (pyDeltaRCM.model.DeltaModel property) output_checkpoint() (pyDeltaRCM.iteration_tools.iteration_tools method) output_data() (pyDeltaRCM.iteration_tools.iteration_tools method)

P

plot_domain() (in module pyDeltaRCM.debug_tools) plot_ind() (in module pyDeltaRCM.debug_tools) plot_line() (in module pyDeltaRCM.debug_tools) Preprocessor (class in pyDeltaRCM.preprocessor)

preprocessor_wrapper() (in module pyDeltaRCM.preprocessor) PreprocessorCLI (class in pyDeltaRCM.preprocessor) process_arguments() (pyDeltaRCM.preprocessor.PreprocessorCLI method) process_input_to_model() (pyDeltaRCM.init_tools.init_tools method)

R

random_pick() (in module pyDeltaRCM.shared_tools) resume_checkpoint (pyDeltaRCM.model.DeltaModel property) route_all_mud_parcels() (pyDeltaRCM.sed_tools.sed_tools method) route_all_sand_parcels() (pyDeltaRCM.sed_tools.sed_tools method)

route_sediment() (pyDeltaRCM.sed_tools.sed_tools method) route_water() (pyDeltaRCM.water_tools.water_tools method) run_jobs() (pyDeltaRCM.preprocessor.BasePreprocessor method) run_one_timestep() (pyDeltaRCM.iteration_tools.iteration_tools method) run_water_iteration() (pyDeltaRCM.water_tools.water_tools method)

S

S0 (pyDeltaRCM.model.DeltaModel property) sand_frac_bc (pyDeltaRCM.model.DeltaModel property) SandRouter (class in pyDeltaRCM.sed_tools) save_checkpoint (pyDeltaRCM.model.DeltaModel property) save_depth_figs (pyDeltaRCM.model.DeltaModel property) save_depth_grids (pyDeltaRCM.model.DeltaModel property) save_discharge_components (pyDeltaRCM.model.DeltaModel property) save_discharge_figs (pyDeltaRCM.model.DeltaModel property) save_discharge_grids (pyDeltaRCM.model.DeltaModel property) save_dt (pyDeltaRCM.model.DeltaModel property) save_eta_figs (pyDeltaRCM.model.DeltaModel property) save_eta_grids (pyDeltaRCM.model.DeltaModel property) save_figs_sequential (pyDeltaRCM.model.DeltaModel property) save_figure() (pyDeltaRCM.iteration_tools.iteration_tools method) save_grids() (pyDeltaRCM.iteration_tools.iteration_tools method) save_grids_and_figs() (pyDeltaRCM.iteration_tools.iteration_tools method) save_iter (pyDeltaRCM.model.DeltaModel property) save_metadata (pyDeltaRCM.model.DeltaModel property) save_sandfrac_figs (pyDeltaRCM.model.DeltaModel property) save_sandfrac_grids (pyDeltaRCM.model.DeltaModel property) save_sedflux_figs (pyDeltaRCM.model.DeltaModel property) save_sedflux_grids (pyDeltaRCM.model.DeltaModel property) save_stage_figs (pyDeltaRCM.model.DeltaModel property) save_stage_grids (pyDeltaRCM.model.DeltaModel property) save_the_checkpoint() (pyDeltaRCM.iteration_tools.iteration_tools method)

save_time_since_checkpoint (pyDeltaRCM.model.DeltaModel property) save_time_since_data (pyDeltaRCM.model.DeltaModel property) save_velocity_components (pyDeltaRCM.model.DeltaModel property) save_velocity_figs (pyDeltaRCM.model.DeltaModel property) save_velocity_grids (pyDeltaRCM.model.DeltaModel property) scale_model_time() (in module pyDeltaRCM.shared_tools) scale_relative_sea_level_rise_rate() (in module pyDeltaRCM.preprocessor) sea_surface_elevation (pyDeltaRCM.model.DeltaModel property) sea_surface_elevation_change (pyDeltaRCM.model.DeltaModel property) sea_surface_mean_elevation (pyDeltaRCM.model.DeltaModel property) sed_lag (pyDeltaRCM.model.DeltaModel property) sed_route() (pyDeltaRCM.sed_tools.sed_tools method) sed_tools (class in pyDeltaRCM.sed_tools) seed (pyDeltaRCM.model.DeltaModel property) set_constants() (pyDeltaRCM.init_tools.init_tools method) set_random_seed() (in module pyDeltaRCM.shared_tools) set_random_state() (in module pyDeltaRCM.shared_tools) show_attribute() (pyDeltaRCM.debug_tools.debug_tools method) show_ind() (pyDeltaRCM.debug_tools.debug_tools method) show_line() (pyDeltaRCM.debug_tools.debug_tools method) SLR (pyDeltaRCM.model.DeltaModel property) solve_water_and_sediment_timestep() (pyDeltaRCM.iteration_tools.iteration_tools method) start_subsidence (pyDeltaRCM.model.DeltaModel property) stepmax (pyDeltaRCM.model.DeltaModel property) subsidence_rate (pyDeltaRCM.model.DeltaModel property)

T

theta_water (pyDeltaRCM.model.DeltaModel property) time (pyDeltaRCM.model.DeltaModel property) time_iter (pyDeltaRCM.model.DeltaModel property)

time_step (pyDeltaRCM.model.DeltaModel property) toggle_subsidence (pyDeltaRCM.model.DeltaModel property) topo_diffusion() (pyDeltaRCM.sed_tools.sed_tools method)

U

u0 (pyDeltaRCM.model.DeltaModel property) update() (pyDeltaRCM.model.DeltaModel method)

update_flow_field() (pyDeltaRCM.water_tools.water_tools method) update_Q() (pyDeltaRCM.water_tools.water_tools method) update_velocity_field() (pyDeltaRCM.water_tools.water_tools method)

V

verbose (pyDeltaRCM.model.DeltaModel property)

W

water_depth (pyDeltaRCM.model.DeltaModel property)

water_tools (class in pyDeltaRCM.water_tools) Width (pyDeltaRCM.model.DeltaModel property)